Commit 1c0ac51f authored by liiskolb's avatar liiskolb
Browse files

note about input saving

parent 8ad134cb
......@@ -29,6 +29,8 @@ gp_globals$base_url = "http://biit.cs.ut.ee/gprofiler"
#' If 'multi_query' is selected, the result is a data frame for comparing multiple input lists,
#' just as in the web tool.
#'
#' The input gene lists are not stored in g:Profiler unless the option 'as_short_link' is set to TRUE.
#'
#' @param query character vector, or a (named) list of character vectors for multiple queries, that can consist of mixed types of gene IDs (proteins, transcripts, microarray IDs, etc), SNP IDs, chromosomal intervals or term IDs.
#' @param organism organism name. Organism names are constructed by concatenating the first letter of the name and the
#' family name. Example: human - 'hsapiens', mouse - 'mmusculus'.
......@@ -64,7 +66,7 @@ gp_globals$base_url = "http://biit.cs.ut.ee/gprofiler"
#'
#' The result fields are further described in the \href{https://cran.r-project.org/package=gprofiler2/vignettes/gprofiler2.html}{vignette}.
#'
#' If 'as_short_link' is set to TRUE, then the result is a character short-link to see and share corresponding results via the g:Profiler web tool.
#' If 'as_short_link' is set to TRUE, then the result is a character short-link to see and share corresponding results via the g:Profiler web tool. In this case, the input gene lists will be stored in a database.
#' @author Liis Kolberg <liis.kolberg@@ut.ee>, Uku Raudvere <uku.raudvere@@ut.ee>
#' @examples
#' gostres <- gost(c("X:1000:1000000", "rs17396340", "GO:0005005", "ENSG00000156103", "NLRP1"))
......
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