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Package: gprofiler2
Type: Package
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Title: Interface to the 'g:Profiler' Toolset
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Version: 0.2.1
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Author: Liis Kolberg <liis.kolberg@ut.ee>, Uku Raudvere <uku.raudvere@ut.ee>
Maintainer: Liis Kolberg <liis.kolberg@ut.ee>
Description: A toolset for functional enrichment analysis and visualization, gene/protein/SNP identifier conversion and mapping orthologous genes across species via 'g:Profiler' (<https://biit.cs.ut.ee/gprofiler>). 
    The main tools are: 
    (1) 'g:GOSt' - functional enrichment analysis and visualization of gene lists; 
    (2) 'g:Convert' - gene/protein/transcript identifier conversion across various namespaces;
    (3) 'g:Orth' - orthology search across species;
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    (4) 'g:SNPense' - mapping SNP rs identifiers to chromosome positions, genes and variant effects.
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    This package is an R interface corresponding to the 2019 update of 'g:Profiler' and provides access to 'g:Profiler' for versions 'e94_eg41_p11' and higher. See the package 'gProfileR' for accessing older versions from the 'g:Profiler' toolset.  
BugReports: https://biit.cs.ut.ee/gprofiler/page/contact
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
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RoxygenNote: 7.1.0
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Imports: jsonlite, RCurl, ggplot2, plotly, tidyr (>= 1.0.0), crosstalk, grDevices, gridExtra, grid, viridisLite, dplyr
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Depends: R (>= 3.5)
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Suggests: 
    knitr,
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    rmarkdown,
    prettydoc
VignetteBuilder: knitr, rmarkdown